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A harmonically trapped active Brownian particle exhibits two types of positional distributions—one has a single peak and the other has a single well—that signify steady-state dynamics with low and high activity, respectively. Adding inertia to the translational motion preserves this strict classification of either single-peak or single-well densities but shifts the dividing boundary between the states in the parameter space. We characterize this shift for the dynamics in one spatial dimension using the static Fokker-Planck equation for the full joint distribution of the state space. We derive local results analytically with a perturbation method for a small rotational velocity and then extend them globally with a numerical approach.
T-cell cytotoxic function relies on the cooperation between the highly specific but poorly adhesive T-cell receptor (TCR) and the integrin LFA-1. How LFA-1-mediated adhesion may scale with TCR stimulation strength is ill-defined. Here, we show that LFA-1 conformation activation scales with TCR stimulation to calibrate human T-cell cytotoxicity. Super-resolution microscopy analysis reveals that >1000 LFA-1 nanoclusters provide a discretized platform at the immunological synapse to translate TCR engagement and density of the LFA-1 ligand ICAM-1 into graded adhesion. Indeed, the number of high-affinity conformation LFA-1 nanoclusters increases as a function of TCR triggering strength. Blockade of LFA-1 conformational activation impairs adhesion to target cells and killing. However, it occurs at a lower TCR stimulation threshold than lytic granule exocytosis implying that it licenses, rather than directly controls, the killing decision. We conclude that the organization of LFA-1 into nanoclusters provides a calibrated system to adjust T-cell killing to the antigen stimulation strength.
Modern computing has enhanced our understanding of how social interactions shape collective behaviour in animal societies. Although analytical models dominate in studying collective behaviour, this study introduces a deep learning model to assess social interactions in the fish species Hemigrammus rhodostomus . We compare the results of our deep learning approach with experiments and with the results of a state-of-the-art analytical model. To that end, we propose a systematic methodology to assess the faithfulness of a collective motion model, exploiting a set of stringent individual and collective spatio-temporal observables. We demonstrate that machine learning (ML) models of social interactions can directly compete with their analytical counterparts in reproducing subtle experimental observables. Moreover, this work emphasizes the need for consistent validation across different timescales, and identifies key design aspects that enable our deep learning approach to capture both short- and long-term dynamics. We also show that our approach can be extended to larger groups without any retraining, and to other fish species, while retaining the same architecture of the deep learning network. Finally, we discuss the added value of ML in the context of the study of collective motion in animal groups and its potential as a complementary approach to analytical models.
We complete the kinetic theory of inhomogeneous systems with long-range interactions initiated in previous works. We use a simpler and more physical formalism. We consider a system of particles submitted to a small external stochastic perturbation and determine the response of the system to the perturbation. We derive the diffusion tensor and the friction by polarization of a test particle. We introduce a general Fokker–Planck equation involving a diffusion term and a friction term. When the friction by polarization can be neglected, we obtain a secular dressed diffusion equation sourced by the external noise. When the external perturbation is created by a discrete collection of N field particles, we obtain the inhomogeneous Lenard–Balescu kinetic equation reducing to the inhomogeneous Landau kinetic equation when collective effects are neglected. We consider a multi-species system of particles. When the field particles are at statistical equilibrium (thermal bath), we establish the proper expression of the fluctuation–dissipation theorem for systems with long-range interactions relating the power spectrum of the fluctuations to the response function of the system. In that case, the friction and diffusion coefficients satisfy the Einstein relation and the Fokker–Planck equation reduces to the inhomogeneous Kramers equation. We also consider a gas of Brownian particles with long-range interactions described by N coupled stochastic Langevin equations and determine its mean and mesoscopic evolution. We discuss the notion of stochastic kinetic equations and the role of fluctuations possibly triggering random transitions from one equilibrium state to the other. Our presentation parallels the one given for the kinetic theory of two-dimensional point vortices in a previous paper (Chavanis in Eur Phys J Plus 138:136, 2023).
Nanofluidics has a very promising future owing to its numerous applications in many domains. It remains, however, very difficult to understand the basic physico-chemical principles that control the behavior of solvents confined in nanometric channels. Here, water and ion transport in carbon nanotubes is investigated using classical force field molecular dynamics simulations. By combining one single walled carbon nanotube (uniformly charged or not) with two perforated graphene sheets, we mimic single nanopore devices similar to experimental ones. The graphitic edges delimit two reservoirs of water and ions in the simulation cell from which a voltage is imposed through the application of an external electric field. By analyzing the evolution of the electrolyte conductivity, the role of the carbon nanotube geometric parameters (radius and chirality) and of the functionalization of the carbon nanotube entrances with OH or COO− groups is investigated for different concentrations of group functions.
Sujets
Fermion dark matter
Chemotaxie
Fermions
Distributed Control
Statistical mechanics
Axion star
Computational modeling
9530Sf
General relativity
Galaxy
Collective motion
Halo
Nanofiltration
Physique statistique
Catastrophe theory
Critical phenomena
Dark matter theory
Random walker
Dark matter fuzzy
9862Gq
Current fluctuations
Mouvement brownien
Kinetic theory
Energy high
Fermion
DNA
9880-k
Field theory scalar
Dark matter
Nonrelativistic
Einstein
Scattering length
Evaporation
Feedback
Euler-Maclaurin
Dark matter halo
Quantum chromodynamics axion
Rotation
Pressure
Turbulence
Formation
Cosmology
Competition
Gravitational collapse
Expansion acceleration
Field theory scalar complex
Atmosphere
Gravitation self-force
Collective behaviour
Denaturation
Dark energy
Computational modelling
Bethe ansatz
Effondrement gravitationnel
Bose-Einstein
Bose–Einstein condensates
Keller-Segel
Black hole
Dissipation
Equation of state
TASEP
Cosmological constant
Dark matter density
Marcheur aléatoire
Gravitation collapse
Thermodynamics
Condensation Bose-Einstein
Density
Collective behavior
Stability
Axion
Cosmological model
Quantum mechanics
Wave function
Energy density
Smoluchowski equation
Collapse
Numerical calculations
Transition vitreuse
Structure
Fokker-Planck
Gravitation
Mass density
Fermi gas
9535+d
Chemotaxis
Energy internal
Gas Chaplygin
Scalar field
Collisionless stellar-systems
9536+x
Diffusion
Phase separation
Effect relativistic
Smoluchowski-Poisson
Hydrodynamics
Brownian motion
Entropy
Asymptotic behavior
Dark matter condensation